Variant calling with NVIDIA Parabricks and GATK

Deep Origin and MILRD have partnered to host a half-day Virtual Training Project (VTP) on variant calling with GATK & NVIDIA Parabricks. Learn to use GPU-accelerated algorithms to speed your genomics workflows by up to 100X!

What You’ll Learn

VTP participants will receive step-by-step training:

• Calling single nucleotide small indel variants with NVIDIA Parabricks and GATK.
• Processing diverse datasets, including human whole exome tumor-normal pairs (SEQC2, Illumina), microbial whole genomes (Mason and Venkateswaran labs, Illumina), and pharmacogenomic diagnostic panels (CariGenetics, ONT PromethION 48).
• Downstream analysis and visualization, including annotation, filtering, and visualization.

What’s Included

Each VTP participant will also receive:

• Example datasets and scripts for variant calling with Parabricks.
• Support from expert mentors.
• Compute credits to use Parabricks to analyze your own data in the Deep Origin platform.

Request Workshop Recording

This workshop has concluded. Register to receive a recording of the event.